| | Yinpterochiroptera | Pteropodidae | Pteropodinae Acerodon |
| | Yinpterochiroptera | Pteropodidae | Pteropodinae Desmalopex |
| | Yinpterochiroptera | Pteropodidae | Pteropodinae Eidolon |
| | Yinpterochiroptera | Pteropodidae | Pteropodinae Mirimiri |
| | Yinpterochiroptera | Pteropodidae | Pteropodinae Neopteryx |
| | Yinpterochiroptera | Pteropodidae | Pteropodinae Pteralopex |
| |  Yinpterochiroptera | Pteropodidae | Pteropodinae Pteropus |
| | Yinpterochiroptera | Pteropodidae | Pteropodinae Styloctenium |
| |  Yinpterochiroptera | Pteropodidae | Nyctimeninae Nyctimene |
| | Yinpterochiroptera | Pteropodidae | Nyctimeninae Paranyctimene |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Aethalops |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Alionycteris |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Balionycteris |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Chironax |
| |  Yinpterochiroptera | Pteropodidae | Cynopterinae Cynopterus |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Dyacopterus |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Haplonycteris |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Latidens |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Megaerops |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Otopteropus |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Penthetor |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Ptenochirus |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Sphaerias |
| | Yinpterochiroptera | Pteropodidae | Cynopterinae Thoopterus |
| | Yinpterochiroptera | Pteropodidae | Rousettinae Eonycteris |
| |  Yinpterochiroptera | Pteropodidae | Rousettinae Rousettus |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Scotonycterini Casinycteris |
| |  Yinpterochiroptera | Pteropodidae | Epomophorinae | Scotonycterini Scotonycteris |
| |  Yinpterochiroptera | Pteropodidae | Epomophorinae | Epomophorini Epomophorus |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Epomophorini Epomops |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Epomophorini Hypsignathus |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Epomophorini Micropteropus |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Epomophorini Nanonycteris |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Plerotini Plerotes |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Myonycterini Lissonycteris |
| | Yinpterochiroptera | Pteropodidae | Epomophorinae | Myonycterini Megaloglossus |
| |  Yinpterochiroptera | Pteropodidae | Epomophorinae | Myonycterini Myonycteris |
| | Yinpterochiroptera | Pteropodidae | Harpyionycterinae Aproteles |
| | Yinpterochiroptera | Pteropodidae | Harpyionycterinae Dobsonia |
| | Yinpterochiroptera | Pteropodidae | Harpyionycterinae Harpyionycteris |
| |  Yinpterochiroptera | Pteropodidae | Macroglossinae Macroglossus |
| | Yinpterochiroptera | Pteropodidae | Macroglossinae Melonycteris |
| | Yinpterochiroptera | Pteropodidae | Macroglossinae Notopteris |
| | Yinpterochiroptera | Pteropodidae | Macroglossinae Syconycteris |
| |  Yinpterochiroptera | Rhinolophoidea | Rhinopomatidae Rhinopoma |
| | Yinpterochiroptera | Rhinolophoidea | Megadermatidae Cardioderma |
| | Yinpterochiroptera | Rhinolophoidea | Megadermatidae Lavia |
| | Yinpterochiroptera | Rhinolophoidea | Megadermatidae Macroderma |
| |  Yinpterochiroptera | Rhinolophoidea | Megadermatidae Megaderma |
| | Yinpterochiroptera | Rhinolophoidea | Megadermatidae Eudiscoderma |
| |  Yinpterochiroptera | Rhinolophoidea | Craseonycteridae Craseonycteris |
| | Yinpterochiroptera | Rhinolophoidea | Rhinonycteridae †Cloeotis |
| | Yinpterochiroptera | Rhinolophoidea | Rhinonycteridae †Brevipalatus |
| | Yinpterochiroptera | Rhinolophoidea | Rhinonycteridae †Brachipposideros |
| | Yinpterochiroptera | Rhinolophoidea | Rhinonycteridae †Paratriaenops |
| | Yinpterochiroptera | Rhinolophoidea | Rhinonycteridae †Triaenops |
| |  Yinpterochiroptera | Rhinolophoidea | Rhinonycteridae Rhinonicteris |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae †Palaeophyllophora |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae †Paraphyllophora |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae †Vaylatsia |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae †Archerops |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae †Miophyllorhina |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae †Riversleigha |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae †Xenorhinos |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae Anthops |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae Asellia |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae Aselliscus |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae Coelops |
| |  Yinpterochiroptera | Rhinolophoidea | Hipposideridae Hipposideros |
| | Yinpterochiroptera | Rhinolophoidea | Hipposideridae Macronycteris |
| | Yinpterochiroptera | Rhinolophoidea | Rhinolophidae †Palaeonycteris |
| |  Yinpterochiroptera | Rhinolophoidea | Rhinolophidae Rhinolophus |